Uses of Class
org.forester.phylogeny.data.Sequence
Packages that use Sequence
Package
Description
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Uses of Sequence in org.forester.io.parsers.phyloxml
Methods in org.forester.io.parsers.phyloxml that return types with arguments of type Sequence -
Uses of Sequence in org.forester.io.parsers.phyloxml.data
Methods in org.forester.io.parsers.phyloxml.data that return Sequence -
Uses of Sequence in org.forester.phylogeny
Methods in org.forester.phylogeny that return types with arguments of type SequenceMethod parameters in org.forester.phylogeny with type arguments of type SequenceModifier and TypeMethodDescriptionvoid
Phylogeny.setSequenceRelationQueries
(Collection<Sequence> sequencesByName) -
Uses of Sequence in org.forester.phylogeny.data
Methods in org.forester.phylogeny.data that return SequenceModifier and TypeMethodDescriptionSequenceRelation.getRef0()
SequenceRelation.getRef1()
NodeData.getSequence()
Convenience method -- always returns the first Sequence.NodeData.getSequence
(int index) Methods in org.forester.phylogeny.data that return types with arguments of type SequenceMethods in org.forester.phylogeny.data with parameters of type SequenceModifier and TypeMethodDescriptionvoid
NodeData.addSequence
(Sequence sequence) int
void
void
void
NodeData.setSequence
(int index, Sequence sequence) void
NodeData.setSequence
(Sequence sequence) Convenience method -- always sets the first Sequence.