Uses of Enum Class
org.forester.evoinference.matrix.character.CharacterStateMatrix.BinaryStates
Packages that use CharacterStateMatrix.BinaryStates
Package
Description
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Uses of CharacterStateMatrix.BinaryStates in org.forester.evoinference.matrix.character
Methods in org.forester.evoinference.matrix.character that return CharacterStateMatrix.BinaryStatesModifier and TypeMethodDescriptionReturns the enum constant of this class with the specified name.static CharacterStateMatrix.BinaryStates[]
CharacterStateMatrix.BinaryStates.values()
Returns an array containing the constants of this enum class, in the order they are declared. -
Uses of CharacterStateMatrix.BinaryStates in org.forester.evoinference.parsimony
Methods in org.forester.evoinference.parsimony that return types with arguments of type CharacterStateMatrix.BinaryStatesMethod parameters in org.forester.evoinference.parsimony with type arguments of type CharacterStateMatrix.BinaryStatesModifier and TypeMethodDescriptionvoid
DolloParsimony.execute
(Phylogeny p, CharacterStateMatrix<CharacterStateMatrix.BinaryStates> external_node_states_matrix) -
Uses of CharacterStateMatrix.BinaryStates in org.forester.io.parsers.nexus
Methods in org.forester.io.parsers.nexus that return types with arguments of type CharacterStateMatrix.BinaryStates -
Uses of CharacterStateMatrix.BinaryStates in org.forester.surfacing
Methods in org.forester.surfacing that return types with arguments of type CharacterStateMatrix.BinaryStatesModifier and TypeMethodDescriptionDomainParsimonyCalculator.createMatrixOfBinaryDomainCombinationPresenceOrAbsence
(List<GenomeWideCombinableDomains> gwcd_list) DomainParsimonyCalculator.createMatrixOfDomainPresenceOrAbsence
(List<GenomeWideCombinableDomains> gwcd_list, SortedSet<String> positive_filter) DomainParsimonyCalculator.createMatrixOfSecondaryFeatureBinaryDomainCombinationPresenceOrAbsence
(List<GenomeWideCombinableDomains> gwcd_list, Map<String, String> domain_id_to_second_features_map) DomainParsimonyCalculator.getInternalStatesMatrix()
Method parameters in org.forester.surfacing with type arguments of type CharacterStateMatrix.BinaryStatesModifier and TypeMethodDescriptionvoid
DomainParsimonyCalculator.executeOnGivenBinaryStatesMatrix
(CharacterStateMatrix<CharacterStateMatrix.BinaryStates> binary_states_matrix, String[] character_labels)