Uses of Interface
org.biojava.nbio.alignment.template.ProfileProfileScorer
Packages that use ProfileProfileScorer
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Uses of ProfileProfileScorer in org.biojava.nbio.alignment
Classes in org.biojava.nbio.alignment that implement ProfileProfileScorerModifier and TypeClassDescriptionclass
SimpleProfileProfileAligner<S extends Sequence<C>,
C extends Compound> -
Uses of ProfileProfileScorer in org.biojava.nbio.alignment.template
Subinterfaces of ProfileProfileScorer in org.biojava.nbio.alignment.templateModifier and TypeInterfaceDescriptioninterface
PartitionRefiner<S extends Sequence<C>,
C extends Compound> Defines an algorithm which computes a new alignmentProfile
by splitting a current alignment and realigning.interface
ProfileProfileAligner<S extends Sequence<C>,
C extends Compound> Defines anAligner
for a pair ofProfile
s.Classes in org.biojava.nbio.alignment.template that implement ProfileProfileScorerModifier and TypeClassDescriptionclass
AbstractProfileProfileAligner<S extends Sequence<C>,
C extends Compound>