Uses of Enum Class
org.biojava.nbio.structure.GroupType
Packages that use GroupType
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Uses of GroupType in org.biojava.nbio.structure
Fields in org.biojava.nbio.structure declared as GroupTypeModifier and TypeFieldDescriptionstatic final GroupType
AminoAcidImpl.type
this is an Amino acid.static final GroupType
HetatomImpl.type
The GroupType is HETATMstatic final GroupType
NucleotideImpl.type
this is a "nucleotide", a special occurance of a Hetatom.Methods in org.biojava.nbio.structure that return GroupTypeModifier and TypeMethodDescriptionChain.getPredominantGroupType()
Get the predominantGroupType
for a given Chain, following these rules: if the ratio of number of residues of a certainGroupType
to total non-water residues is above the threshold 0.95, then thatGroupType
is returned if there is noGroupType
that is above the threshold then theGroupType
with most members is chosen, logging itChainImpl.getPredominantGroupType()
AminoAcidImpl.getType()
Group.getType()
HetatomImpl.getType()
NucleotideImpl.getType()
static GroupType
Returns the enum constant of this class with the specified name.static GroupType[]
GroupType.values()
Returns an array containing the constants of this enum class, in the order they are declared.Methods in org.biojava.nbio.structure with parameters of type GroupTypeModifier and TypeMethodDescriptionStructureTools.getAllGroupsFromSubset
(Atom[] atoms, GroupType types) Expand a set of atoms into all groups from the same structure.Chain.getAtomGroups
(GroupType type) ChainImpl.getAtomGroups
(GroupType type) Chain.getSeqResGroups
(GroupType type) ChainImpl.getSeqResGroups
(GroupType type)