Class QsAlignParameters
java.lang.Object
org.biojava.nbio.structure.align.quaternary.QsAlignParameters
The parameter bean for the
QsAlign
algorithm.- Since:
- 5.0.0
- Author:
- Aleix Lafita
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptiondouble
The maximum allowed distance between the centroids of two equivalent Subunits, in A.double
The maximum orientation angle between two equivalent Subunits, in radians.double
The maximum allowed RMSD of the alignment, in A.void
setdCutoff
(double dCutoff) The maximum allowed distance between the centroids of two equivalent Subunits, in A.void
setMaxOrientationAngle
(double maxOrientationAngle) The maximum orientation angle between two equivalent Subunits, in radians.void
setMaxRmsd
(double maxRmsd) The maximum allowed RMSD of the alignment, in A.
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Constructor Details
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QsAlignParameters
public QsAlignParameters()
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Method Details
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getdCutoff
public double getdCutoff()The maximum allowed distance between the centroids of two equivalent Subunits, in A.- Returns:
- dCutoff
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setdCutoff
public void setdCutoff(double dCutoff) The maximum allowed distance between the centroids of two equivalent Subunits, in A.- Parameters:
dCutoff
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getMaxRmsd
public double getMaxRmsd()The maximum allowed RMSD of the alignment, in A.- Returns:
- maxRmsd
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setMaxRmsd
public void setMaxRmsd(double maxRmsd) The maximum allowed RMSD of the alignment, in A.- Parameters:
maxRmsd
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getMaxOrientationAngle
public double getMaxOrientationAngle()The maximum orientation angle between two equivalent Subunits, in radians. Range [0, Pi].- Returns:
- the maximum orientation angle
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setMaxOrientationAngle
public void setMaxOrientationAngle(double maxOrientationAngle) The maximum orientation angle between two equivalent Subunits, in radians. Range [0, Pi].- Parameters:
maxOrientationAngle
- maximum orientation angle
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