Uses of Interface
org.forester.io.parsers.IteratingPhylogenyParser
Packages that use IteratingPhylogenyParser
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Uses of IteratingPhylogenyParser in org.forester.io.parsers.nexus
Classes in org.forester.io.parsers.nexus that implement IteratingPhylogenyParser -
Uses of IteratingPhylogenyParser in org.forester.io.parsers.nhx
Classes in org.forester.io.parsers.nhx that implement IteratingPhylogenyParser -
Uses of IteratingPhylogenyParser in org.forester.rio
Methods in org.forester.rio with parameters of type IteratingPhylogenyParserModifier and TypeMethodDescriptionstatic final RIO
RIO.executeAnalysis
(IteratingPhylogenyParser p, File species_tree_file, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy) static final RIO
RIO.executeAnalysis
(IteratingPhylogenyParser p, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, boolean produce_log, boolean verbose, boolean transfer_taxonomy) static final RIO
RIO.executeAnalysis
(IteratingPhylogenyParser p, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy)