Uses of Class
org.biojava.nbio.core.search.io.blast.BlastHspBuilder
Packages that use BlastHspBuilder
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Uses of BlastHspBuilder in org.biojava.nbio.core.search.io.blast
Methods in org.biojava.nbio.core.search.io.blast that return BlastHspBuilderModifier and TypeMethodDescriptionBlastHspBuilder.setHspAlignLen
(int hspAlignLen) BlastHspBuilder.setHspBitScore
(double hspBitScore) BlastHspBuilder.setHspEvalue
(double hspEvalue) BlastHspBuilder.setHspGaps
(int hspGaps) BlastHspBuilder.setHspHitFrame
(int hspHitFrame) BlastHspBuilder.setHspHitFrom
(int hspHitFrom) BlastHspBuilder.setHspHitTo
(int hspHitTo) BlastHspBuilder.setHspHseq
(String hspHseq) BlastHspBuilder.setHspIdentity
(int hspIdentity) BlastHspBuilder.setHspIdentityString
(String hspIdentityString) BlastHspBuilder.setHspNum
(int hspNum) BlastHspBuilder.setHspPositive
(int hspPositive) BlastHspBuilder.setHspQseq
(String hspQseq) BlastHspBuilder.setHspQueryFrame
(int hspQueryFrame) BlastHspBuilder.setHspQueryFrom
(int hspQueryFrom) BlastHspBuilder.setHspQueryTo
(int hspQueryTo) BlastHspBuilder.setHspScore
(int hspScore) BlastHspBuilder.setMismatchCount
(Integer mismatchCount) BlastHspBuilder.setPercentageIdentity
(Double percentageIdentity)