Uses of Enum Class
org.forester.sdi.SDIutil.ALGORITHM
Packages that use SDIutil.ALGORITHM
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Uses of SDIutil.ALGORITHM in org.forester.rio
Methods in org.forester.rio with parameters of type SDIutil.ALGORITHMModifier and TypeMethodDescriptionstatic final RIO
RIO.executeAnalysis
(File gene_trees_file, File species_tree_file, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy) static final RIO
RIO.executeAnalysis
(File gene_trees_file, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, boolean produce_log, boolean verbose, boolean transfer_taxonomy) static final RIO
RIO.executeAnalysis
(File gene_trees_file, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy) static final RIO
RIO.executeAnalysis
(IteratingPhylogenyParser p, File species_tree_file, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy) static final RIO
RIO.executeAnalysis
(IteratingPhylogenyParser p, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, boolean produce_log, boolean verbose, boolean transfer_taxonomy) static final RIO
RIO.executeAnalysis
(IteratingPhylogenyParser p, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy) static final RIO
RIO.executeAnalysis
(Phylogeny[] gene_trees, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, boolean produce_log, boolean verbose, boolean transfer_taxonomy) static final RIO
RIO.executeAnalysis
(Phylogeny[] gene_trees, Phylogeny species_tree, SDIutil.ALGORITHM algorithm, RIO.REROOTING rerooting, String outgroup, int first, int last, boolean produce_log, boolean verbose, boolean transfer_taxonomy) -
Uses of SDIutil.ALGORITHM in org.forester.sdi
Methods in org.forester.sdi that return SDIutil.ALGORITHMModifier and TypeMethodDescriptionstatic SDIutil.ALGORITHM
Returns the enum constant of this class with the specified name.static SDIutil.ALGORITHM[]
SDIutil.ALGORITHM.values()
Returns an array containing the constants of this enum class, in the order they are declared.